Medical Image Segmentation using U-Net

This course is a specialized program designed for individuals interested in medical image analysis and deep learning. In this hands-on course, participants will be introduced to medical image segmentation, a critical task in diagnosing and treating diseases. 

The primary focus will be on lung tumor segmentation using the U-Net architecture, a highly effective convolutional neural network (CNN) model for image segmentation tasks. Participants will gain valuable insights into preprocessing medical images, implementing the U-Net architecture, training segmentation models, and assessing their performance. By the end of the course, students will be well-equipped to tackle medical image segmentation challenges and understand the significance of this technology in healthcare.

Learning Outcomes:

Upon completing this course, participants will:

- Understand the fundamentals of medical image segmentation and its importance in healthcare.

- Develop proficiency in Python programming for deep learning.

- Gain expertise in preprocessing medical image data, including lung tumor images.

- Master the architecture and components of the U-Net convolutional neural network.

- Implement and train U-Net models for lung tumor segmentation.

- Apply techniques for evaluating and fine-tuning segmentation models.

- Gain insights into the "Lung Tumor Segmentation" dataset and its relevance in medical imaging.

- Be prepared to contribute to medical image analysis and healthcare applications.

Prerequisites:

- Basic programming knowledge, preferably in Python.

- Familiarity with fundamental machine learning concepts.

- Access to a Python development environment with libraries such as NumPy, TensorFlow, or PyTorch for deep learning.

Libraries and Programming Language Used:

- Python for coding and scripting.

- TensorFlow or PyTorch for building and training deep learning models.

- Common libraries like NumPy for data manipulation.

- Libraries for medical image handling and visualization, such as OpenCV and SimpleITK.

Course Syllabus:

Introduction to Medical Image Segmentation

   - Significance of medical image segmentation.

   - Applications in disease diagnosis and treatment.

Setting Up the Development Environment

   - Installing and configuring Python, TensorFlow/PyTorch, and relevant libraries.

   - Preparing the development environment for medical image segmentation projects.

Introduction to Lung Tumor Segmentation

   - Overview of the "Lung Tumor Segmentation" dataset.

   - Understanding medical image formats (DICOM) and conventions.

Data Preprocessing for Medical Image Segmentation

   - Loading and visualizing medical images.

   - Data normalization and preprocessing techniques for lung tumor images.

U-Net Architecture for Image Segmentation

   - Fundamentals of the U-Net architecture.

   - Understanding encoder and decoder structures.

Building a Lung Tumor Segmentation Model

   - Designing and implementing the U-Net model for lung tumor segmentation.

   - Model compilation and configuration for medical images.

Model Training

   - Preparing training and validation datasets.

   - Training the U-Net segmentation model on lung tumor images

Model Evaluation and Metrics

   - Assessing segmentation model performance using Dice coefficient, Jaccard index, and more.

   - Visualizing segmented lung tumor regions.

This course offers a specialized program tailored for individuals passionate about medical image analysis leveraging deep learning technologies. Participants will delve into the critical field of medical image segmentation, focusing primarily on lung tumor segmentation using the U-Net architecture, a renowned convolutional neural network model. The curriculum covers essential aspects such as preprocessing medical images, implementing and training U-Net models, and evaluating their performance. By the end of this course, students will be adept at handling medical image segmentation tasks and understanding their pivotal role in healthcare diagnostics and treatment.